Some of these are already a part of the "How to Customize" list but wanted to provide everyone with a more extensive offering from wluther. He has come up with some great modifications and I put some of these in more normal deployment.
He is working on this awesome rating system, so if you decide to try these please reply back to the original message with you evaluation and difficulty level.
Thank you wluther for your contributions.
Network Performance Monitor
Custom SQL Dynamic Graphing Resource
Custom SWQL Views Manager Resource
Custom Query Resources, Increased Default Workspace
Custom Node & Polling, Combined Details Resource
Custom User Links, Modified User Links Resource
Make ALL Links, In A SWQL Custom Query Resource, Open In New Tabs By Default
Increase The Default Number Of Items Displayed On The "Manage QoE Applications" Page
Occam Nibbles
Custom_Occam_Firmware_Versions_List.OrionReport
Cisco Configurations
Network Configuration Manager Tidbits
NCM PolicyCacheResults Individual Totals
NCM "OVERALL RUNNING VS. STARTUP CONFIG CONFLICTS" SWQL REPORT